OK, you have semi-bricked your PSP I think...
1. Go to recovery menu and then advanced and click toggle flash1.... USB your PSP into the computer and make a backup of all the files in flash1 then unplug
2. Now go to recovery menu and then go to advanced. Finally click on format flash 1 and restore all settings.
(warning this will restore you to original settings but you keep your custom firmware and gamesaves and ISOs etc)
(you should probably make a backup of those anyway though)
Now install GEN D2 and remember when install is finished dont click on reboot PSP!!!!!!
Always do the full shutdown, as that is a sure way of getting another semi brick
(above is possibly the first ever use of "USB" as a verb... I wander if it will stick?)
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