Yeah, you probably haven't configured your settings in the VSH menu.
put your "CPU Clock XMB" on 300/150
put your "Cpu Clock Game" on 333/166
This should improve your game speed and should get rid of that spamming window.
If all that doesn't work, you should use an Iso/Cso file. Which is what I'm operating on my 5.03Gen-A 3000.
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